Single Molecule Simulation of Diffusion and Enzyme Kinetics
نویسندگان
چکیده
منابع مشابه
Single Molecule Simulation of Diffusion and Enzyme Kinetics.
This work presents a molecular-scale agent-based model for the simulation of enzymatic reactions at experimentally measured concentrations. The model incorporates stochasticity and spatial dependence, using diffusing and reacting particles with physical dimensions. We developed strategies to adjust and validate the enzymatic rates and diffusion coefficients to the information required by the co...
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Semi-Markov processes have found increasing applications in modeling the kinetics of single enzyme molecules. Detailed balance is a widely accepted condition for Markov models of closed chemical systems and well known to be equivalent to the reversibility of a stationary Markov process. We show that for a semi-Markov process detailed balance is only a necessary condition, but not sufficient, fo...
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ژورنال
عنوان ژورنال: The Journal of Physical Chemistry B
سال: 2016
ISSN: 1520-6106,1520-5207
DOI: 10.1021/acs.jpcb.5b12544